PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0038s0086.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 451aa    MW: 50915.2 Da    PI: 6.8294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0038s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16144234199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k++ ps+ ++   + lpk+f++++    + +  +tl de+ + + v++      +r  l++GW++F+  n+L egD++vF+l++ sef
  Kalax.0038s0086.1.p 144 FLKTMQPSHCSRGFFVKLPKNFCNDYLP--NHDALMTLVDEHEEHYVVTF----LAERLALSGGWRGFCTTNKLLEGDILVFQLTSPSEF 227
                          89*********************99943..35668***************....445588***********************9887888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Kalax.0038s0086.1.p 228 --KVYIVRA 234
                          ..8888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-21138235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-22140235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-21142233No hitNo description
PfamPF023629.9E-15144234IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493144235IPR003340B3 DNA binding domain
SMARTSM010197.8E-20144235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNVSPRIKHE DMVMEAPHPR QVQDSCLDID PDDQDADDDE DYDEMPISFL STSLRPNRDS  60
SSPTMKRRKP KPLEVKRKLF KIVKHPLGHS REIHPEGVHK LAKPKAVRIR VKKLACHSTT  120
DTKSSVMERA EEVQANLAAD QPSFLKTMQP SHCSRGFFVK LPKNFCNDYL PNHDALMTLV  180
DEHEEHYVVT FLAERLALSG GWRGFCTTNK LLEGDILVFQ LTSPSEFKVY IVRANTLTEV  240
DGALGLLNLD TKPATSRRNA SSGADIEQLK SIESFTILVN GVNIESELPT HYKAVYFELC  300
SSQQALLHDG LLKNIGPKLA SEIISETVKI ADTVRACKLS TPHEDYTIWD RTLEAFEMLG  360
MEVAFIRARL KRIASIAFDS EEARESKLFR ETVREKACVD EEITSLHLKL VELRRACRRL  420
DAGAEALRAS AEKHERRFQK AVSAPWLPET *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16576KRRKPKPLEVKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066892.19e-97PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A067L1H99e-97A0A067L1H9_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-31B3 family protein